PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_40338g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 255aa    MW: 27619.8 Da    PI: 8.8568
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_40338g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.8e-184594255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr ++ +g+Wv+eIr p     +  kr++lg++ tae Aa+a++aa ++l+g
  MA_40338g0010 45 QYRGVRMRS-WGSWVSEIRAP-----HqkKRIWLGSYSTAEAAARAYDAAVLCLKG 94
                   69****998.**********7.....335************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-3045104IPR001471AP2/ERF domain
PROSITE profilePS5103222.35245102IPR001471AP2/ERF domain
SMARTSM003804.0E-3445108IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2045104IPR016177DNA-binding domain
CDDcd000182.67E-1945104No hitNo description
PRINTSPR003673.1E-94657IPR001471AP2/ERF domain
PfamPF008471.8E-104694IPR001471AP2/ERF domain
PRINTSPR003673.1E-96884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVCRRKDSEC HRNVLIGSQQ HSECRECQVL SKASKKSSRG SSSGQYRGVR MRSWGSWVSE  60
IRAPHQKKRI WLGSYSTAEA AARAYDAAVL CLKGSSATLN FPESATIIHP PQSCKPPLMS  120
PRSIQKVAAA AAYGSPGPAT DFAGSNGGDC AAQSLQVSLD SNLKTEVAPQ TMANSANSNS  180
DVGVTEEISW LERFLESPSR VHHTYDQMLS CALLSSXXVH CYRLIWLRTP TGSMRVMVSI  240
IMRISAACGA SPDDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1445102260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1188499e-80FJ118849.1 Pinus taeda isolate 5484 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188509e-80FJ118850.1 Pinus taeda isolate 5492 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188519e-80FJ118851.1 Pinus taeda isolate 5488 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188529e-80FJ118852.1 Pinus taeda isolate 5490 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188539e-80FJ118853.1 Pinus taeda isolate 5477 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188549e-80FJ118854.1 Pinus taeda isolate 5485 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188559e-80FJ118855.1 Pinus taeda isolate 5493 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188569e-80FJ118856.1 Pinus taeda isolate 5478 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188579e-80FJ118857.1 Pinus taeda isolate 5483 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188609e-80FJ118860.1 Pinus taeda isolate 5481 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188619e-80FJ118861.1 Pinus taeda isolate 5482 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188629e-80FJ118862.1 Pinus taeda isolate 5487 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188639e-80FJ118863.1 Pinus taeda isolate 5489 anonymous locus UMN_971_01 genomic sequence.
GenBankFJ1188659e-80FJ118865.1 Pinus taeda isolate 5479 anonymous locus UMN_971_01 genomic sequence.
GenBankJQ2644089e-80JQ264408.1 Pinus radiata isolate 5494 hypothetical protein (UMN_971_01) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB2CSN54e-33B2CSN5_TAXCU; Transcription factor AP2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.16e-22ERF family protein